tRNA-derived SINE (short retroposon) from Muridae.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
About 50,000 copies in the mouse and rate genomes, with on average 73% similarity to the consensus outside CpGs. The very high substitution level of the copies is partly due to the high CpG-content and the likely existence of multiple hard-to-define subfamilies in this short sequence.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 83 positions long. The average length of non-redundant hits to the model is 78. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ID4b_Rn [Requires Repbase registration]