ID4 (DF0004188)

tRNA-derived SINE (short retroposon) from Muridae.

Description

About 50,000 copies in the mouse and rate genomes, with on average 73% similarity to the consensus outside CpGs. The very high substitution level of the copies is partly due to the high CpG-content and the likely existence of multiple hard-to-define subfamilies in this short sequence.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily Unknown

Hit Statistics

The model is 83 positions long. The average length of non-redundant hits to the model is 78. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 29820 340329 8412 43144

External Database Links

  • Repbase : ID4b_Rn [Requires Repbase registration]