Non-LTR retrotransposon in mouse - fragment before ORF2.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
This is the 5'end of L1B_MM in RepBase. It is ~80% similar to L1VL1_5end 223-1128. The 3'end of L1B_MM was known as L1_Mus3_3end, hence the name change.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1028 positions long. The average length of non-redundant hits to the model is 211.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1B_MM [Requires Repbase registration]