IAPEY3-int (DF0004168)

Internal sequence of a class-2 endogenous retrovirus in mouse.


6 bp TSDs. LTRs are listed as IAPEY3_LTR. IAPEY3_I is 80% identical to IAPEYI. The IAPEY3 subfamily is young and some members still contain intact ORFs. 3 full ORFs: gag 890-1856 (322 aa), pol (RT, IN, RNase) 3149-5549 (800 aa), env 5909-6668 (253 aa)


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Unknown

Hit Statistics

The model is 7680 positions long. The average length of non-redundant hits to the model is 1069.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 1801 31802 1728 20539

External Database Links

  • Repbase : IAPEY3_I [Requires Repbase registration]