Internal sequence of a class-2 endogenous retrovirus in mouse.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
6 bp TSDs. LTRs are listed as IAPEY3_LTR. IAPEY3_I is 80% identical to IAPEYI. The IAPEY3 subfamily is young and some members still contain intact ORFs. 3 full ORFs: gag 890-1856 (322 aa), pol (RT, IN, RNase) 3149-5549 (800 aa), env 5909-6668 (253 aa)
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 7680 positions long. The average length of non-redundant hits to the model is 1069.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : IAPEY3_I [Requires Repbase registration]