SINE retroelement from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
SINE_TE is a member of the V-SINE superfamily. The sequence is derived by consensus from fish DNA sequences, excluding zebrafish.
V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit.
Ogiwara I, Miya M, Ohshima K, Okada N;
Genome Res 2002;12:316-324. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 277 positions long. The average length of non-redundant hits to the model is 168.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : SINE_TE [Requires Repbase registration]