SINE_TE (DF0004166)

SINE retroelement from zebrafish

Description

SINE_TE is a member of the V-SINE superfamily. The sequence is derived by consensus from fish DNA sequences, excluding zebrafish.

References

  1. V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit.
    Ogiwara I, Miya M, Ohshima K, Okada N;
    Genome Res 2002;12:316-324. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily tRNA-V

Hit Statistics

The model is 277 positions long. The average length of non-redundant hits to the model is 168.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 1612 163231 1159 149213

External Database Links

  • Repbase : SINE_TE [Requires Repbase registration]