Gypsy13-I_DR (DF0004053)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by sometimes 100% identical LTRs (Gypsy13-LTR_DR). 4-bp target site duplications. The internal portion encodes two proteins: a 556-aa gag protein (pos. 95-1755) and 1577-aa polyprotein (pos. 1756-6486, conceptual translation) composed of protease, reverse transcriptase, and integrase domains. PBS is identical to that in Gypsy9_DR. PBS is complementary Arg-tRNA.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6488 positions long. The average length of non-redundant hits to the model is 2590.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 22 1760 14 1079

External Database Links