PROTOP1_DR (DF0004048)

Non-autonomous P-like DNA transposon from zebrafish

Description

The zebraish genome contains about 1650 copies that are 7% divergent from the consensus. It has 33-bp terminal inverted repeats and creates 7-bp targets site duplications. Classified as a P-element based on the 7-bp TSDs and similar-length TIRS in known P-elements.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily P

Hit Statistics

The model is 384 positions long. The average length of non-redundant hits to the model is 296.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 1212 4282 1111 2420

External Database Links

  • Repbase : PROTOP1_DR [Requires Repbase registration]