Non-autonomous P-like DNA transposon from zebrafish
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The zebraish genome contains about 1650 copies that are 7% divergent from the consensus. It has 33-bp terminal inverted repeats and creates 7-bp targets site duplications. Classified as a P-element based on the 7-bp TSDs and similar-length TIRS in known P-elements.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 384 positions long. The average length of non-redundant hits to the model is 296.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : PROTOP1_DR [Requires Repbase registration]