Kolobok-N1_DR (DF0004047)

Non-autonomous Kolobok transposon from zebrafish

Description

This is a ancient transposon, built from copies which are ~90% identical to the consensus. The TIR is half of the whole length (~400 bp), making a perfect hairpin structure. The TSD is putatively TTAA tetranucleotide. Its termini are more similar to that of most Koloboks rather than to PiggyBacs, but the classification is uncertain.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Kolobok-T2?

Note: Uncertain classification.

Hit Statistics

The model is 799 positions long. The average length of non-redundant hits to the model is 232.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 9082 32500 8539 28821

External Database Links