Non-autonomous hAT DNA transposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
There are 2500 copies in the zebrafish genome that are ~5% divergent from the consensus sequence. It has 17-bp terminal inverted repeats and creates 8-bp target site duplications. The final 35+ bp are similar to the termini of the Ac elements hAT-N17_ZM and hAT-N41_DR, while there are coding regions remnants matching Activator-like elements best.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1156 positions long. The average length of non-redundant hits to the model is 650.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HATN5_DR [Requires Repbase registration]