HATN5_DR (DF0004046)

Non-autonomous hAT DNA transposon from zebrafish

Description

There are 2500 copies in the zebrafish genome that are ~5% divergent from the consensus sequence. It has 17-bp terminal inverted repeats and creates 8-bp target site duplications. The final 35+ bp are similar to the termini of the Ac elements hAT-N17_ZM and hAT-N41_DR, while there are coding regions remnants matching Activator-like elements best.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Ac

Hit Statistics

The model is 1156 positions long. The average length of non-redundant hits to the model is 650.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 2285 11034 2269 9582

External Database Links

  • Repbase : HATN5_DR [Requires Repbase registration]