LOOPERN1_DR (DF0004042)

Non-autonomous DNA transposon from zebrafish

Description

16-bp terminal inverted repeats. TTAA target site duplications. Almost 6,000 matches in the genome. Pos 1-650 and 1023-1234 (end) match the beginning and end of the autonomous Kolobok-4_DR element by about 80% and the element appears to be misnamed.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Kolobok-T2

Hit Statistics

The model is 1234 positions long. The average length of non-redundant hits to the model is 913.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 4628 18554 4540 14152

External Database Links

  • Repbase : LOOPERN1_DR [Requires Repbase registration]