Gypsy-14-I_DR (DF0004026)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by 99% identical LTRs (Gypsy-14-LTR_DR). 4-bp target site duplications. The internal portion encodes two proteins: a 572-aa gag protein (pos. 100-1815) and 1518-aa Gypsy-14_DR2p polyprotein (pos. 1845-6398) composed of protease, reverse transcriptase, and integrase domains. PBS is complementary to Arg-tRNA.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6455 positions long. The average length of non-redundant hits to the model is 3806.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 9 1477 9 1077

External Database Links