Gypsy-24-I_DR (DF0004023)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy-24-LTR_DR. 4-bp target site duplications. The internal portion encodes one polyprotein: the 1464-aa Gypsy-24_DR1p (pos. 114-4505) composed of gag, protease, reverse transcriptase, and integrase domains. The consensus sequence was built from several copies less than 4% diverged from each other.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4529 positions long. The average length of non-redundant hits to the model is 2873.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 17 2534 15 1825

External Database Links