Gypsy12-I_DR (DF0004019)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish - fossilize

Description

Flanked by 99% identical LTRs (Gypsy12-LTR_DR). 4-bp target site duplications. The internal portion encodes two proteins: a 469-aa gag (pos. 153-1559) and a 1543-aa polyprotein (pos. 1475-6105, conceptual translation) composed of protease, reverse transcriptase, and integrase domains. PBS is identical to that in Gypsy9_DR.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6169 positions long. The average length of non-redundant hits to the model is 1902.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 12 2431 12 1482

External Database Links