ERV3_DR-I (DF0004006)

Internal sequence of an endogenous retrovirus from zebrafish

Description

Not a consensus, but a single copy located at danRer4 chr6:39596928-39606262 with 99% identical LTRs (ERV3_DR); there are a few dozen copies in genome though. ORFs: gag 895-2664 (1 stop codon), pol 2812-6240, env?? 6278-8527.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 9338 positions long. The average length of non-redundant hits to the model is 641.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 111 2027 86 1622

External Database Links

  • Repbase : ERV3_DR-I [Requires Repbase registration]