ERVN1-I_DR (DF0003960)

Internal sequence of a non-autonomous endogenous retrovirus from zebrafish


ERVN1-I_DR is an internal portion of the ERVN1_DR miniature nonautonomous endogenous retrovirus. Long terminal repeat of ERVN1_DR is deposited in Repbase as ERVN1-LTR_DR. Some copies of ERVN1_DR are flanked by identical LTRs. Average identity of ERVN1-I_DR copies to their consensus sequence is above 96%. The internal contains PBS complementary to the Phe-tRNA. ERVN1_DR is characterized by 5-bp target site duplications. Since there are no autonomous LTR retrotransposons similar to ERVN1_DR, its exact classification is not possible.


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Hit Statistics

The model is 660 positions long. The average length of non-redundant hits to the model is 437.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 317 422 269 331

External Database Links

  • Repbase : ERVN1-I_DR [Requires Repbase registration]