Internal sequence of a non-autonomous endogenous retrovirus from zebrafish
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ERVN1-I_DR is an internal portion of the ERVN1_DR miniature nonautonomous endogenous retrovirus. Long terminal repeat of ERVN1_DR is deposited in Repbase as ERVN1-LTR_DR. Some copies of ERVN1_DR are flanked by identical LTRs. Average identity of ERVN1-I_DR copies to their consensus sequence is above 96%. The internal contains PBS complementary to the Phe-tRNA. ERVN1_DR is characterized by 5-bp target site duplications. Since there are no autonomous LTR retrotransposons similar to ERVN1_DR, its exact classification is not possible.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 660 positions long. The average length of non-redundant hits to the model is 437.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ERVN1-I_DR [Requires Repbase registration]