ERVN1-I_DR (DF0003960)

Internal sequence of a non-autonomous endogenous retrovirus from zebrafish

Description

ERVN1-I_DR is an internal portion of the ERVN1_DR miniature nonautonomous endogenous retrovirus. Long terminal repeat of ERVN1_DR is deposited in Repbase as ERVN1-LTR_DR. Some copies of ERVN1_DR are flanked by identical LTRs. Average identity of ERVN1-I_DR copies to their consensus sequence is above 96%. The internal contains PBS complementary to the Phe-tRNA. ERVN1_DR is characterized by 5-bp target site duplications. Since there are no autonomous LTR retrotransposons similar to ERVN1_DR, its exact classification is not possible.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Hit Statistics

The model is 660 positions long. The average length of non-redundant hits to the model is 437.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 317 422 269 331

External Database Links

  • Repbase : ERVN1-I_DR [Requires Repbase registration]