Internal sequence of an endogenous retrovirus from zebrafish
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Complete intact ERV1_DR at danRer4 chr21:9719748-9728163. ORFs: gag-pol 858-5756 (pol starting at ca 2250), env 6240-7532. pol and env closest to (other Danio ERVs and) PRIMA4 in primates. Heidmann has called this group "class IV".
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 8416 positions long. The average length of non-redundant hits to the model is 401. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ERV1-I_DR [Requires Repbase registration]