ERV1_DR-I (DF0003959)

Internal sequence of an endogenous retrovirus from zebrafish

Description

Complete intact ERV1_DR at danRer4 chr21:9719748-9728163. ORFs: gag-pol 858-5756 (pol starting at ca 2250), env 6240-7532. pol and env closest to (other Danio ERVs and) PRIMA4 in primates. Heidmann has called this group "class IV".

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Unknown

Hit Statistics

The model is 8416 positions long. The average length of non-redundant hits to the model is 401. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 174 4606 158 4225

External Database Links

  • Repbase : ERV1-I_DR [Requires Repbase registration]