HATN2_DR (DF0003952)
Non-autonomous hAT DNA transposon from zebrafish
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
The consensus sequence was reconstructed based on 12 copies present in sequenced DNA that represents ~1% of the genome. Several hundred copies of HATN2_DR are expected to populate the complete zebrafish genome. The element was active long time ago; its copies are ~14% divergent from the consensus sequence. The genome is populated by multiple subfamilies related to HATN2_DR. This element is characterized by 17-bp terminal inverted repeats and the 8-bp target site duplications. The hAT classification is only based on the 8 bp TSDs.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | hAT |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1219 positions long. The average length of non-redundant hits to the model is 514.5. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 4025 | 11204 | 3733 | 8034 |
External Database Links
- Repbase : HATN2_DR [Requires Repbase registration]