HATN2_DR (DF0003952)

Non-autonomous hAT DNA transposon from zebrafish

Description

The consensus sequence was reconstructed based on 12 copies present in sequenced DNA that represents ~1% of the genome. Several hundred copies of HATN2_DR are expected to populate the complete zebrafish genome. The element was active long time ago; its copies are ~14% divergent from the consensus sequence. The genome is populated by multiple subfamilies related to HATN2_DR. This element is characterized by 17-bp terminal inverted repeats and the 8-bp target site duplications. The hAT classification is only based on the 8 bp TSDs.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT

Hit Statistics

The model is 1219 positions long. The average length of non-redundant hits to the model is 514.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 4025 11204 3733 8034

External Database Links

  • Repbase : HATN2_DR [Requires Repbase registration]