Gypsy11-I_DR (DF0003951)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy11-LTR_DR LTRs. 4-bp target site duplications. The internal portion encodes one 2006-aa polyprotein composed of gag, protease, reverse transcriptase, and integrase domains (pos. 132-6149). PBS is complementary to Pro-tRNA.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6196 positions long. The average length of non-redundant hits to the model is 3588.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 16 1372 12 875

External Database Links