Tc1/Mariner-type DNA transposon from zebrafish
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210-bp terminal inverted repeats. TA target site duplications. The zebrafish genome contains about 3500 Tc1-1_DR copies that are ~85% identical to the consensus. The consensus encodes a 340-aa transposase (pos. 376-1395). The Tc1-1_DR consensus sequence is ~90% identical to Tc1 elements present in frogs (TXr from Xenopus laevis, Prince from Rana pipiens). Presumably, independent multiple events of horizontal transfer were involved in evolution of these transposons in vertebrates.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1625 positions long. The average length of non-redundant hits to the model is 285.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Tc1-1_DR [Requires Repbase registration]