Ngaro1_DR (DF0003936)

Ngaro-like LTR retrotransposon from zebrafish

Description

Ngaro1 is a retrotransposon from Danio rerio that has putative gag, reverse transcriptase, and tyrosine recombinase domains. It also has a putative recombination target site (see Genbank accession AY152729).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Ngaro

Hit Statistics

The model is 6578 positions long. The average length of non-redundant hits to the model is 322.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 235 31600 118 26819

External Database Links

  • Repbase : Ngaro1_DR [Requires Repbase registration]