SINE retroelement from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
~94% identical to consensus. Subfamily of HE1_DR1. In consensus, poly TG is replaced with poly K to avoid cross-matches.
Retropositional parasitism of SINEs on LINEs: identification of SINEs and LINEs in elasmobranchs.
Ogiwara I, Miya M, Ohshima K, Okada N;
Mol Biol Evol 1999;16:1238-1250. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 363 positions long. The average length of non-redundant hits to the model is 225.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HE2_DR [Requires Repbase registration]