HE2_DR (DF0003927)

SINE retroelement from zebrafish


~94% identical to consensus. Subfamily of HE1_DR1. In consensus, poly TG is replaced with poly K to avoid cross-matches.


  1. Retropositional parasitism of SINEs on LINEs: identification of SINEs and LINEs in elasmobranchs.
    Ogiwara I, Miya M, Ohshima K, Okada N;
    Mol Biol Evol 1999;16:1238-1250. Pubmed


Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily tRNA-V

Hit Statistics

The model is 363 positions long. The average length of non-redundant hits to the model is 225.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 338 218164 298 199679

External Database Links

  • Repbase : HE2_DR [Requires Repbase registration]