Gypsy-27-I_DR (DF0003919)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish


Flanked by Gypsy-27-LTR_DR. 4-bp target site duplications. The internal portion encodes one polyprotein: the 1632-aa Gypsy-27_DR1p (pos. 71-4966) composed of gag, protease, reverse transcriptase, and integrase domains. The consensus sequence was built from 5 copies less than 1% diverged from the consensus sequence.


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5177 positions long. The average length of non-redundant hits to the model is 2472.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 13 1932 11 1208

External Database Links