Non-autonomous Kolobok transposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Consensus was built from copies which are ~13% divergent from it. The TSD is TTAA, and the TIR is 12 bp long. These haracteristics fit Kolobok as well as Looper/PiggyBac elements.
|Class||Cut and Paste|
Note: Uncertain classification.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 370 positions long. The average length of non-redundant hits to the model is 191.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Kolobok-N3_DR [Requires Repbase registration]