Kolobok-N3_DR (DF0003893)

Non-autonomous Kolobok transposon from zebrafish

Description

Consensus was built from copies which are ~13% divergent from it. The TSD is TTAA, and the TIR is 12 bp long. These haracteristics fit Kolobok as well as Looper/PiggyBac elements.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Kolobok-T2?

Note: Uncertain classification.

Hit Statistics

The model is 370 positions long. The average length of non-redundant hits to the model is 191.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 6798 15285 5624 10909

External Database Links