HarbingerN2_DR (DF0003889)

Non-autonomous Harbinger DNA transposon from zebrafish

Description

HARBINGERN2_DR copies are flanked by 3-bp target site duplications (usually TAA) generated upon their integration in the genome. It has perfect 16-bp terminal inverted repeats similar to other HARBINGERs. There are approximately 1000 copies of HARBINGERN2_DR harbored by the zebrafish genome. The consensus sequence was reconstructed based on 11 copies which are ~5% divergent from the consensus sequence.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily PIF-Harbinger

Hit Statistics

The model is 674 positions long. The average length of non-redundant hits to the model is 538.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 2951 15169 2809 11571

External Database Links