Non-autonomous Harbinger DNA transposon from zebrafish
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HARBINGERN2_DR copies are flanked by 3-bp target site duplications (usually TAA) generated upon their integration in the genome. It has perfect 16-bp terminal inverted repeats similar to other HARBINGERs. There are approximately 1000 copies of HARBINGERN2_DR harbored by the zebrafish genome. The consensus sequence was reconstructed based on 11 copies which are ~5% divergent from the consensus sequence.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 674 positions long. The average length of non-redundant hits to the model is 538.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HARBINGERN2_DR [Requires Repbase registration]