LOOPERN3_DR (DF0003845)

Non-autonomous DNA transposon from zebrafish

Description

10-bp terminal inverted repeats. TTAA (or TTTAAA) target site duplications. Copies are ~10% divergent from the consensus sequence. About 2000 copies in the genome. Pos 1-237 are 90% and 904-1011 (end) are 75% identical to the termini of the autonomous Kolobok-T2 element.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Kolobok-T2

Hit Statistics

The model is 1011 positions long. The average length of non-redundant hits to the model is 555.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 1982 17372 1842 14372

External Database Links

  • Repbase : LOOPERN3_DR [Requires Repbase registration]