Non-autonomous Kolobok transposon from zebrafish
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The TSDs are TTAA specific. The termini are similar to known Koloboks. Reverse complemented for similarity to Kolobok transposases at pos 416-517 and extensive similarity to Kolobok-N2A_DR.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1371 positions long. The average length of non-redundant hits to the model is 453.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Kolobok-N2_DR [Requires Repbase registration]