hAT-N19_DR (DF0003803)
Non-autonomous hAT DNA transposon from zebrafish
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
hAT-N19_DR is a family of nonautonomous DNA transposons that belongs to the hAT superfamily. The genome harbors over one hundred copies of hAT-N19_DR that are ~94% identical to their consensus sequence. This transposable element is characterized by 8-bp target site duplications and 15-bp terminal inverted repeats.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | hAT-Charlie |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 660 positions long. The average length of non-redundant hits to the model is 330.6. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 419 | 3438 | 364 | 2442 |
External Database Links
- Repbase : hAT-N19_DR [Requires Repbase registration]