SUSHIIDR1 (DF0003788)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Putative novel GYPSY-like retrotransposon similar to Fugu rubripes retrotransposon Sushi-ichi, with perfect 156 bp LTRs (SUSHIIDR1_LTR) and a reading frame in pos. 224-4476 with 3 frame shifts.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5030 positions long. The average length of non-redundant hits to the model is 790.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 146 5958 95 3103

External Database Links

  • Repbase : SUSHIIDR1 [Requires Repbase registration]