Internal sequence of a Gypsy LTR retrotransposon from zebrafish
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Putative novel GYPSY-like retrotransposon similar to Fugu rubripes retrotransposon Sushi-ichi, with perfect 156 bp LTRs (SUSHIIDR1_LTR) and a reading frame in pos. 224-4476 with 3 frame shifts.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5030 positions long. The average length of non-redundant hits to the model is 790.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : SUSHIIDR1 [Requires Repbase registration]