EnSpm-5_DR (DF0003773)

Autonomous En/Spm DNA transposon from zebrafish

Description

EnSpm-5_DR is a young family of autonomous En/Spm DNA transposons. The consensus sequence was derived based on multiple alignment of several copies of EnSpm-5_DR that are less then 2% divergent from each other. EnSpm-5_DR transposons are characterized by 2-bp target-site duplications and imperfect 12-bp terminal inverted repeats (1 mismatch). See also commentary on EnSpm-2_DR.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily CMC-EnSpm

Hit Statistics

The model is 7671 positions long. The average length of non-redundant hits to the model is 455.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 197 7783 104 5237

External Database Links

  • Repbase : EnSpm-5_DR [Requires Repbase registration]