Autonomous En/Spm DNA transposon from zebrafish
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EnSpm-5_DR is a young family of autonomous En/Spm DNA transposons. The consensus sequence was derived based on multiple alignment of several copies of EnSpm-5_DR that are less then 2% divergent from each other. EnSpm-5_DR transposons are characterized by 2-bp target-site duplications and imperfect 12-bp terminal inverted repeats (1 mismatch). See also commentary on EnSpm-2_DR.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 7671 positions long. The average length of non-redundant hits to the model is 455.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : EnSpm-5_DR [Requires Repbase registration]