LTR retrotransposon from zebrafish: long terminal repeat
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Presumed matches to Copia probably were based on low complexity DNA. The internal sequence encodes a Gypsy type gag. The element is non-autonomous of course.
Note: Uncertain classification.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 484 positions long. The average length of non-redundant hits to the model is 418.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Copia-8-LTR_DR [Requires Repbase registration]