Long terminal repeat of a non-autonomous endogenous retrovirus from zebrafi
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ERVN1-LTR_DR is a long terminal repeat of the ERVN1_DR miniature nonautonomous endogenous retrovirus. Internal portion of ERVN1_DR is deposited in Repbase as ERVN1-I_DR. Solo copies of ERVN1-LTR_DR are flanked by 5-bp target site duplications. Some copies of ERVN1-LTR_DR were multiplied not during retrotransposition of ERVN1_DR but due to transpositions of the hAT-2N1_DR nonautonomous transposon.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 345 positions long. The average length of non-redundant hits to the model is 216.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ERVN1-LTR_DR [Requires Repbase registration]