Non-autonomous DIRS-like LTR retrotransposon
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
DIRS1a_DR is a subfamily of DIRS1_DR retrotransposons. There are ~100 copies of DIRS1a_DR in the genome, they are ~0.7% divergent from the consensus sequence. Therefore, this family retrotransposed in the zebrafish genome very recently. There is a 11% divergence between the DIRS1a_DR and DIRS1_DR consensus sequences. Presumably, DIRS1a_DR is a nonautonomous family because ORF1-ORF3, that are intact in DIRS1_DR, are corrupted by stop codons. The DIRS1a_DR was reconstructed based on multiple alignment of 7 copies.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5979 positions long. The average length of non-redundant hits to the model is 1251.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DIRS1a_DR [Requires Repbase registration]