L2-3_DRe (DF0003720)

Non-LTR retrotransposon from zebrafish

Description

Re-classified to L2 and renamed. L2-3_DR is a family of L2-like non-LTR retrotransposons and it was active in zebrafish recently. The consensus sequence encodes a 516-aa gag (position 254-1801) and 971-aa pol (positions 1805-4717) protein. The latter is composed of AP endonuclease (aa positions 72-282) and reverse transcriptase (aa positions 543-788). The first is distantly related to proteins encoded by ORF1 in known L2-like elements from chicken, pufferfish and turtle. L2-3_DR copies are less than ~5% divergent from the consensus sequence. There are almost 6,000 matches to L2-3_DR in the zebrafish genome.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L2

Hit Statistics

The model is 5068 positions long. The average length of non-redundant hits to the model is 734. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 4130 19518 3940 15356

External Database Links

  • Repbase : L2-3_DRe [Requires Repbase registration]