HATN5A_DR (DF0003717)

Non-autonomous hAT DNA transposon from zebrafish

Description

HATN5A_DR is a composite transposon, carrying a TDR8 copy (positions 278-1221). 800 copies in the zebrafish genome that are ~5% divergent from the consensus sequence. It has 17-bp terminal inverted repeats and creates 8-bp target site duplications. The final 35+ bp are similar to the termini of the Ac elements hAT-N17_ZM and hAT-N41_DR.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Ac

Hit Statistics

The model is 1501 positions long. The average length of non-redundant hits to the model is 828.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 694 14548 678 13392

External Database Links

  • Repbase : HATN5A_DR [Requires Repbase registration]