Non-autonomous DNA transposon from zebrafish
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Several hundred copies of ACROBAT1 are expected to populate the zebrafish genome. The element was active recently, its copies are ~5% divergent from the consensus sequence. The genome is populated by multiple subfamilies related to ACROBAT1. This element is characterized by 19-bp terminal inverted repeats. Its classification is uncertain and needs additional data. Usually, ACROBAT1 copies are flanked by CCT and TGG. It's possible that they have been inserted into the CCTGG target site and generated duplications of T.
|Class||Cut and Paste|
Note: Uncertain classification.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1379 positions long. The average length of non-redundant hits to the model is 728.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ACROBAT1 [Requires Repbase registration]