ACROBAT1 (DF0003709)

Non-autonomous DNA transposon from zebrafish

Description

Several hundred copies of ACROBAT1 are expected to populate the zebrafish genome. The element was active recently, its copies are ~5% divergent from the consensus sequence. The genome is populated by multiple subfamilies related to ACROBAT1. This element is characterized by 19-bp terminal inverted repeats. Its classification is uncertain and needs additional data. Usually, ACROBAT1 copies are flanked by CCT and TGG. It's possible that they have been inserted into the CCTGG target site and generated duplications of T.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Stowaway?

Note: Uncertain classification.

Hit Statistics

The model is 1379 positions long. The average length of non-redundant hits to the model is 728.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 763 1211 761 1201

External Database Links

  • Repbase : ACROBAT1 [Requires Repbase registration]