L1-8_DR (DF0003654)

L1-like non-LTR retrotransposon from zebrafish

Description

L1-8_DR is a family of L1-like non-LTR retrotransposon. There are ~100 copies of L1-8_DR in the zebrafish genome. They are ~2% divergent from the consensus sequence. The consensus sequence is incomplete (a ~300-bp 5' end is not present). The consensus sequence encodes two proteins: a 290-aa L1-8_DR1p (positions 1-820) and a 1271-aa L1-8_DR2p (positions 1248-5060). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-8_DR1p is a putative RNA/DNA binding protein, and L1-8_DR2p is composed of the AP endonuclease and reverse transcriptase domains.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 5248 positions long. The average length of non-redundant hits to the model is 887.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 81 1127 74 774

External Database Links

  • Repbase : L1-8_DR [Requires Repbase registration]