Nimb-2_DR (DF0003645)

I-like non-LTR retrotransposon from zebrafish

Description

~9-bp TSDs. Only 25 sequences in the zebrafish genome. >97% identical to consensus. The 3' termini are composed by (GAA)n microsatellite.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily I

Hit Statistics

The model is 5281 positions long. The average length of non-redundant hits to the model is 584.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 141 1555 106 999

External Database Links

  • Repbase : Nimb-2_DR [Requires Repbase registration]