Gypsy10-I_DR (DF0003602)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy10-LTR_DR LTRs. 4-bp target site duplications. The internal portion encodes one 1988-aa polyprotein composed of gag, protease, reverse transcriptase, and integrase domains (pos. 142-6105).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6147 positions long. The average length of non-redundant hits to the model is 3735.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 22 1378 20 966

External Database Links