Non-autonomous Helitron from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
This transposon is usually inserted into A|TT target sites (no TSDs). Subterminal TIRs: pos. 3-15 and 2550-2538; a palindrome at pos. 2552-2571. The Helitron-N1_DR consensus sequence is 76% identical to the consensus sequence of the Helitron-N2_XT from the frog genome. Therefore, horizontal transfer was involved in evolution of these transposons.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2581 positions long. The average length of non-redundant hits to the model is 676.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Helitron-N1_DR [Requires Repbase registration]