Autonomous hAT DNA transposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
hAT-2_DR is an autonomous DNA transposon. This transposon is characterized by the 8-bp target site duplications and 16-bp terminal inverted repeats. The consensus encodes a 611-aa hAT transposase (pos. 255-2087). The genome contains about 1000 copies of hAT-2_DR nonautonomous elements that are ~97% identical to the consensus. Nearly all these copies are nonautonomous elements. The transposase-encoding elements are present just in 2 copies.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2536 positions long. The average length of non-redundant hits to the model is 432.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : hAT-2_DR [Requires Repbase registration]