Harbinger3_DR (DF0003575)

Autonomous Harbinger DNA transposon from zebrafish


HARBINGER3_DR is an autonomous Harbinger-like DNA transposon. The consensus sequence was built based on several copies that are 90% identical to each other. This transposon is characterized by the 3-bp target site duplications and 12-bp terminal inverted repeats. Protein machinery encoded by HARBINGER3_DR was involved in transpositions of HARBINGER3N_DR nonautonomous elements. HARBINGER3_DR encodes two proteins, a 343-aa transposase (2 exons, positions 368-1037 and 1119-1480) and a 221-aa DNA-binding protein that contains the myb/trihelix motif (2 exons, positions 3345-2940, 1762-1503).


Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily PIF-Harbinger

Hit Statistics

The model is 3599 positions long. The average length of non-redundant hits to the model is 355.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 1607 11796 1572 11581

External Database Links