Autonomous Harbinger DNA transposon from zebrafish
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HARBINGER3_DR is an autonomous Harbinger-like DNA transposon. The consensus sequence was built based on several copies that are 90% identical to each other. This transposon is characterized by the 3-bp target site duplications and 12-bp terminal inverted repeats. Protein machinery encoded by HARBINGER3_DR was involved in transpositions of HARBINGER3N_DR nonautonomous elements. HARBINGER3_DR encodes two proteins, a 343-aa transposase (2 exons, positions 368-1037 and 1119-1480) and a 221-aa DNA-binding protein that contains the myb/trihelix motif (2 exons, positions 3345-2940, 1762-1503).
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3599 positions long. The average length of non-redundant hits to the model is 355.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HARBINGER3_DR [Requires Repbase registration]