Gypsy-15-I_DR (DF0003566)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by 99% identical LTRs (Gypsy-15-LTR_DR). 4-bp target site duplications. The internal portion encodes two proteins: a 628-aa gag protein (pos. 112-1995) and 1554-aa Gypsy-15_DR2p polyprotein (pos. 2022-6683) composed of protease, reverse transcriptase, and integrase domains. PBS is complementary to Arg-tRNA.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6739 positions long. The average length of non-redundant hits to the model is 4640.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 15 1740 14 1049

External Database Links