L1-10_DR (DF0003525)

L1-like non-LTR retrotransposon from zebrafish

Description

L1-10_DR forms a separate family of L1-like non-LTR retrotransposons. This element is less than 70% identical to members of other L1-like families identified in the zebrafish genome. This family was active recently (no stop codons in ORF2). L1-10_DR encodes two L1-like proteins: a 281-aa gag protin (positions 136-978), probably RNA-binding, and a 1260-aa polyprotein (positions 1588-5367), which includes AP endonuclease and reverse transcriptase domains.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 5708 positions long. The average length of non-redundant hits to the model is 488.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 101 3328 57 1749

External Database Links

  • Repbase : L1-10_DR [Requires Repbase registration]