LOOPERN2_DR (DF0003516)
Non-autonomous DNA transposon from zebrafish
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
14-bp terminal inverted repeats. TTAA or TTTAAA target site duplications. Copies are ~6% divergent from the consensus sequence. About 2700 copies in the genome. It should probably be renamed to Kolobok_N2B_DR as this sequence is closely similar (including termini) to Kolobok-N2_DR and Kolobok-N2A_DR, the latter containing remnants of Kolobok coding sequences.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | Kolobok-T2 |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1375 positions long. The average length of non-redundant hits to the model is 687.8. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 1918 | 12970 | 1847 | 11529 |
External Database Links
- Repbase : LOOPERN2_DR [Requires Repbase registration]