LOOPERN2_DR (DF0003516)

Non-autonomous DNA transposon from zebrafish

Description

14-bp terminal inverted repeats. TTAA or TTTAAA target site duplications. Copies are ~6% divergent from the consensus sequence. About 2700 copies in the genome. It should probably be renamed to Kolobok_N2B_DR as this sequence is closely similar (including termini) to Kolobok-N2_DR and Kolobok-N2A_DR, the latter containing remnants of Kolobok coding sequences.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Kolobok-T2

Hit Statistics

The model is 1375 positions long. The average length of non-redundant hits to the model is 687.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 1918 12970 1847 11529

External Database Links

  • Repbase : LOOPERN2_DR [Requires Repbase registration]