Copia-8-I_DR (DF0003478)

LTR retrotransposon from zebrafish: internal sequence

Description

MPresumed matches to Copia probably were based on low complexity DNA. The internal sequence (pos 1-399) encodes the C-terminal fragment of a Gypsy type gag. The element is non-autonomous of course.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy? Article

Note: Uncertain classification.

Hit Statistics

The model is 1620 positions long. The average length of non-redundant hits to the model is 319.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 401 3021 315 1911

External Database Links