Copia-8-I_DR (DF0003478)
LTR retrotransposon from zebrafish: internal sequence
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
MPresumed matches to Copia probably were based on low complexity DNA. The internal sequence (pos 1-399) encodes the C-terminal fragment of a Gypsy type gag. The element is non-autonomous of course.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | Gypsy? | Article |
Note: Uncertain classification.
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1620 positions long. The average length of non-redundant hits to the model is 319.7. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 401 | 3021 | 315 | 1911 |
External Database Links
- Repbase : Copia-8-I_DR [Requires Repbase registration]