Gypsy6-I_DR (DF0003473)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by sometimes identical Gypsy6-LTR_DRs. The internal portion encodes a 354-aa gag protein (pos. 160-1221) and a 1418-aa polyprotein (pos. 1092-5345), composed of protease, reverse transcriptase and integrase domains. This sequence is Very close to Tngr1 described by Russell Poulter.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5410 positions long. The average length of non-redundant hits to the model is 1192. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 40 3521 33 2879

External Database Links

  • Repbase : Gypsy6-I_DR [Requires Repbase registration]