ANGEL (DF0003448)

Non-autonomous DNA transposon from zebrafish

Description

Originally deemed a hAT, but no evidence for 8 bp TSDs. New consensus in 2015 with TTAA termini removed and some minor improvements. Termini match those of Kolobok-N10_DR and TOL3_OL, but this group does not match autonomous Kolobok termini yet. Given the TSDs, the elements could also be PiggyBacs.

References

  1. Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification.
    Izsvák Z, Ivics Z, Shimoda N, Mohn D, Okamoto H, Hackett PB;
    J Mol Evol 1999;48:13-21. Pubmed

  2. Repetitive elements and their genetic applications in zebrafish.
    Izsvák Z, Ivics Z, Hackett PB;
    Biochem Cell Biol 1997;75:507-523. Pubmed

  3. Genetic applications of transposons and other repetitive elements in zebrafish.
    Ivics Z, Izsvák Z, Hackett PB;
    Methods Cell Biol 1999;60:99-131. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Kolobok?

Note: Uncertain classification.

Hit Statistics

The model is 309 positions long. The average length of non-redundant hits to the model is 196.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 45615 173745 36921 122734

External Database Links

  • Repbase : ANGEL [Requires Repbase registration]