Non-autonomous DNA transposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Originally deemed a hAT, but no evidence for 8 bp TSDs. New consensus in 2015 with TTAA termini removed and some minor improvements. Termini match those of Kolobok-N10_DR and TOL3_OL, but this group does not match autonomous Kolobok termini yet. Given the TSDs, the elements could also be PiggyBacs.
Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification.
Izsvák Z, Ivics Z, Shimoda N, Mohn D, Okamoto H, Hackett PB;
J Mol Evol 1999;48:13-21. Pubmed
Repetitive elements and their genetic applications in zebrafish.
Izsvák Z, Ivics Z, Hackett PB;
Biochem Cell Biol 1997;75:507-523. Pubmed
Genetic applications of transposons and other repetitive elements in zebrafish.
Ivics Z, Izsvák Z, Hackett PB;
Methods Cell Biol 1999;60:99-131. Pubmed
|Class||Cut and Paste|
Note: Uncertain classification.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 309 positions long. The average length of non-redundant hits to the model is 196.6. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ANGEL [Requires Repbase registration]