RTE-1_DR (DF0003387)
RTE-like non-LTR retrotransposon from zebrafish
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
RTE-1_DR is a non-LTR retrotransposon that belongs to the RTE clade. Copies of RTE-1_DR are ~1% divergent form the consensus sequence. RTE-1_DR encodes a 1049-aa protein composed of endonuclease and reverse transcriptase domains.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LINE | |
| Superfamily | RTE-BovB |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4083 positions long. The average length of non-redundant hits to the model is 814.3. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 96 | 253 | 81 | 112 |
External Database Links
- Repbase : RTE-1_DR [Requires Repbase registration]