RTE-1_DR (DF0003387)

RTE-like non-LTR retrotransposon from zebrafish

Description

RTE-1_DR is a non-LTR retrotransposon that belongs to the RTE clade. Copies of RTE-1_DR are ~1% divergent form the consensus sequence. RTE-1_DR encodes a 1049-aa protein composed of endonuclease and reverse transcriptase domains.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily RTE-BovB

Hit Statistics

The model is 4083 positions long. The average length of non-redundant hits to the model is 814.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 96 253 81 112

External Database Links

  • Repbase : RTE-1_DR [Requires Repbase registration]