DNA-TA-2_DR (DF0003371)
DNA transposon from zebrafish
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
The TSD is mostly TA dinucleotide. This consensus is characterized by ~65 bp TIR (mismatch from 12-30). The termini are related to those of EnSpm-N16_DR and EnSpm-N10_DR.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | CMC-EnSpm |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 196 positions long. The average length of non-redundant hits to the model is 162.6. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 1680 | 17386 | 1538 | 14591 |
External Database Links
- Repbase : DNA-TA-2_DR [Requires Repbase registration]