Gypsy105-I_Dr (DF0003343)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Gypsy105-I_DR is flanked by Gypsy105-LTR_DR LTRs. 4-bp target site duplications. The internal portion encodes two proteins: the 306-aa gag Gypsy105_DR1p (pos. 18-935) and 1058-aa polyprotein (pos. 842-4246, conceptual translation) composed of protease, reverse transcriptase, and integrase domains. Some insertions are fairly recent, considering the high similarity between their flanking LTRs. Consensus obtained after the alignment of at least three independent insertions bearing at least 85% homology over at least 1000 bp.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4282 positions long. The average length of non-redundant hits to the model is 1420.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 37 4118 33 3103

External Database Links