Gypsy-22-I_DR (DF0003304)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy-22-LTR_DR. 4-bp target site duplications. The internal portion encodes one 1686-aa polyprotein (pos. 605-5662) composed of gag, protease, reverse transcriptase, and integrase domains. The consensus sequence was built from five copies less than 2% diverged from the consensus sequence.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5713 positions long. The average length of non-redundant hits to the model is 995.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 60 2160 31 1602

External Database Links