Gypsy-22-I_DR (DF0003304)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish


Flanked by Gypsy-22-LTR_DR. 4-bp target site duplications. The internal portion encodes one 1686-aa polyprotein (pos. 605-5662) composed of gag, protease, reverse transcriptase, and integrase domains. The consensus sequence was built from five copies less than 2% diverged from the consensus sequence.


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5713 positions long. The average length of non-redundant hits to the model is 995.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 60 2160 31 1602

External Database Links